Motor Alignment Window


Activate Motion Correction

Auto-configure motion correction with the currently displayed image. Required before motor alignment can be performed.

Stage Position

The stage position in motor coordinates of the last added calibration point.

Auto Read

Automatically query stage position when adding a calibration point.

Reset Points

Remove all current calibration points.

Generate Alignment

Create alignment between stage coordinates and scanning coordinates. Requires a minimum of three calibration points.

Alignment Info - Rotation

Rotation between stage coordinates and scanning coordinates in degrees.

Alignment Info - Shear

Shear of stage coordinates.

Alignment Info - AspectRatio

Aspect ratio of the scanning coordinates.

Correct Aspect Ratio

Changes the scanning coordinates to force aspect ratio to 1.

Reset Alignment

Reset Motor Alignment.


See the documentation page Alignment between Stage and Scanner for a video tutorial.